Stem-loop cel-mir-789-1

Accession

MI0005189

Description

Caenorhabditis elegans cel-mir-789-1 precursor miRNA mir-789

Gene
family

RF00905; mir-789

Literature search

2 open access papers mention cel-mir-789-1
(2 sentences)

Sequence

711 reads, 8 reads per million, 14 experiments

uguccugaaggcaggcAAUUGAUGACCCAGACAAGGACuaaucaagauugucgaucuagUCCCUGCCUGGGUCACCAAUUGUcggcccccgcgggca
(((((((..(((.((((((((.((((((((.((.(((((((((.........))).)))))).)).)))))))).)))))))).)))..)).)))))

Structure

     -  aa   a        A        A  A      -   aag 
ugucc ug  ggc ggcAAUUG UGACCCAG CA GGACua auc   a
||||| ||  ||| |||||||| |||||||| || |||||| |||   u
acggg gc  ccg cUGUUAAC ACUGGGUC GU CCUgau uag   u
     c  cc   g        C        C  C      c   cug 

Annotation confidence Medium

Genome context

chrIV: 16740693-16740789 [-]

Mature cel-miR-789-3p

• Accession: MIMAT0004224
• Description: Caenorhabditis elegans cel-miR-789-3p mature miRNA
• Sequence: 60 - UCCCUGCCUGGGUCACCAAUUGU - 82
• Evidence: experimental ; 454 [1], Illumina [2]

Mature cel-miR-789-5p

• Accession: MIMAT0032016
• Description: Caenorhabditis elegans cel-miR-789-5p mature miRNA
• Sequence: 17 - AAUUGAUGACCCAGACAAGGAC - 38
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54