Stem-loop cel-mir-789-2

Accession

MI0005190

Description

Caenorhabditis elegans cel-mir-789-2 precursor miRNA mir-789

Gene
family

RF00905; mir-789

Literature search

2 open access papers mention cel-mir-789-2
(2 sentences)

Sequence

2876 reads, 25 reads per million, 16 experiments

uguccugaaggcggacAAUUGAUGACUCAGGCAGGGACuaaucaugauugucgauuuagUCCCUGCCUGGGUCACCAAUUGUcggcccccgcggaca
(((((((..(((.((((((((.(((((((((((((((((((((.........)).))))))))))))))))))).)))))))).)))..)).)))))

Structure

     -  aa   g        A                   -  aug 
ugucc ug  ggc gacAAUUG UGACUCAGGCAGGGACuaa uc   a
||||| ||  ||| |||||||| ||||||||||||||||||| ||   u
acagg gc  ccg cUGUUAAC ACUGGGUCCGUCCCUgauu ag   u
     c  cc   g        C                   u  cug 

Annotation confidence Medium

Genome context

chrIV: 17309307-17309403 [-]

Mature cel-miR-789-3p

• Accession: MIMAT0004224
• Description: Caenorhabditis elegans cel-miR-789-3p mature miRNA
• Sequence: 60 - UCCCUGCCUGGGUCACCAAUUGU - 82
• Evidence: experimental ; 454 [1], Illumina [2]

Mature cel-miR-789-2-5p

• Accession: MIMAT0032017
• Description: Caenorhabditis elegans cel-miR-789-2-5p mature miRNA
• Sequence: 17 - AAUUGAUGACUCAGGCAGGGAC - 38
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54