Stem-loop cel-mir-790

Accession

MI0005191

Description

Caenorhabditis elegans cel-mir-790 precursor miRNA mir-790

Gene
family

RF00894; mir-790

Literature search

1 open access papers mention cel-mir-790
(1 sentences)

Sequence

10046 reads, 63 reads per million, 15 experiments

gccggCUUGGCACUCGCGAACACCGCGauuucacuuauaacucgCGGCGUUAGCUCUGUGUCAAACCggc
(((((.(((((((..((.(((.((((((((........)).)))))).))).))...))))))).)))))

Structure

     C       -UC  G   A      -  uca 
gccgg UUGGCAC   GC AAC CCGCGa uu   c
||||| |||||||   || ||| |||||| ||    
cggCC AACUGUG   CG UUG GGCgcu aa   u
     A       UCU  A   C      c  uau 

Annotation confidence Medium

Genome context

chrIV: 5566422-5566491 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-790

Mature cel-miR-790-5p

• Accession: MIMAT0004225
• Description: Caenorhabditis elegans cel-miR-790-5p mature miRNA
• Sequence: 6 - CUUGGCACUCGCGAACACCGCG - 27
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature cel-miR-790-3p

• Accession: MIMAT0020349
• Description: Caenorhabditis elegans cel-miR-790-3p mature miRNA
• Sequence: 45 - CGGCGUUAGCUCUGUGUCAAACC - 67
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577