Stem-loop cel-mir-792

Accession

MI0005193

Description

Caenorhabditis elegans cel-mir-792 precursor miRNA

Sequence

274 reads, 20 reads per million, 12 experiments

aaguuggucaacguuUGAGAGUUCAAAAGAUUUAGCAAUUuuauacgagugaaaUUGAAAUCUCUUCAACUUUCAGAcguuuucugauuu
(((((((..((((((((((((((.((.((((((..(((((((((....))))))))))))))).)).))))))))))))))..)))))))

Structure

       uc              C  A      AG         a 
aaguugg  aacguuUGAGAGUU AA AGAUUU  CAAUUuuau c
|||||||  |||||||||||||| || ||||||  |||||||||  
uuuaguc  uugcAGACUUUCAA UU UCUAAA  GUUaaagug g
       uu              C  C      --         a 

Annotation confidence Low

Genome context

chrV: 3042092-3042181 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-792

Mature cel-miR-792-3p

• Accession: MIMAT0004227
• Description: Caenorhabditis elegans cel-miR-792-3p mature miRNA
• Sequence: 55 - UUGAAAUCUCUUCAACUUUCAGA - 77
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature cel-miR-792-5p

• Accession: MIMAT0020351
• Description: Caenorhabditis elegans cel-miR-792-5p mature miRNA
• Sequence: 16 - UGAGAGUUCAAAAGAUUUAGCAAUU - 40
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577