Stem-loop cel-mir-794

Accession

MI0005195

Description

Caenorhabditis elegans cel-mir-794 precursor miRNA

Literature search

6 open access papers mention cel-mir-794
(9 sentences)

Sequence

1510 reads, 13 reads per million, 10 experiments

cugagcgugucucuUGAGGUAAUCAUCGUUGUCACUucgcaaaguuggaauUGAAAACGUUGUCUAUCUCGAAaggcuuaucag
((((....((((.((((((((..((.((((.(((.(((.((....))))).))).)))).))..)))))))).))))...))))

Structure

    gcgu    c        AU  U    G   C   g  a 
cuga    gucu uUGAGGUA  CA CGUU UCA Uuc ca a
||||    |||| ||||||||  || |||| ||| ||| ||  
gacu    cgga AGCUCUAU  GU GCAA AGU aag gu g
    -auu    A        CU  U    A   u   -  u 

Annotation confidence Medium

Genome context

chrI: 12595690-12595773 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-794

Mature cel-miR-794-5p

• Accession: MIMAT0004229
• Description: Caenorhabditis elegans cel-miR-794-5p mature miRNA
• Sequence: 15 - UGAGGUAAUCAUCGUUGUCACU - 36
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature cel-miR-794-3p

• Accession: MIMAT0020352
• Description: Caenorhabditis elegans cel-miR-794-3p mature miRNA
• Sequence: 52 - UGAAAACGUUGUCUAUCUCGAA - 73
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577