Stem-loop cel-mir-796

Accession

MI0005197

Description

Caenorhabditis elegans cel-mir-796 precursor miRNA

Literature search

1 open access papers mention cel-mir-796
(1 sentences)

Sequence

110200 reads, 147.0 reads per million, 80 experiments

acucuaaugacaagcUGGAAUGUAGUUGAGGUUAGUAAaagcacuauacuuguuACAAACCUUGCCACGUUCCGACUugucaaaagagu
(((((..(((((((.((((((((.((.((((((.(((((((.......))).)))).)))))))).)))))))).)))))))..)))))

Structure

     aa       c        A  U      A    -   ca 
acucu  ugacaag UGGAAUGU GU GAGGUU GUAA aag  c
|||||  ||||||| |||||||| || |||||| |||| |||  u
ugaga  acuguUC GCCUUGCA CG UUCCAA CAuu uuc  a
     aa       A        C  -      A    g   au 

Annotation confidence High

Genome context

chrX: 1798928-1799016 [-]

Mature cel-miR-796-5p

• Accession: MIMAT0004231
• Description: Caenorhabditis elegans cel-miR-796-5p mature miRNA
• Sequence: 16 - UGGAAUGUAGUUGAGGUUAGUAA - 38
• Evidence: experimental ; 454 [1], Illumina [2]

Mature cel-miR-796-3p

• Accession: MIMAT0053607
• Description: Caenorhabditis elegans cel-miR-796-3p mature miRNA
• Sequence: 55 - ACAAACCUUGCCACGUUCCGACU - 77
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54