Stem-loop cel-mir-797

Accession

MI0005198

Description

Caenorhabditis elegans cel-mir-797 precursor miRNA

Literature search

2 open access papers mention cel-mir-797
(6 sentences)

Sequence

508 reads, 11 reads per million, 13 experiments

cguccaauggacgaUAUCACAGCAAUCACAAUGAGAAGAauacaucuagauacucUUUUCAUUGGUUUCUGUGAAAUcguauuugaaug
(((.(((...(((((.((((((.((.(.(((((((((((.((........)).)))))))))))).)))))))).)))))..))).)))

Structure

   c   ugg     A      C  U A           a  cau 
cgu caa   acgaU UCACAG AA C CAAUGAGAAGA ua   c
||| |||   ||||| |||||| || | ||||||||||| ||    
gua guu   ugcUA AGUGUC UU G GUUACUUUUcu au   u
   a   -ua     A      -  U -           c  aga 

Annotation confidence Medium

Genome context

chrX: 4757109-4757197 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-797

Mature cel-miR-797-5p

• Accession: MIMAT0004232
• Description: Caenorhabditis elegans cel-miR-797-5p mature miRNA
• Sequence: 15 - UAUCACAGCAAUCACAAUGAGAAGA - 39
• Evidence: experimental ; 454 [1], Illumina [2], CLIPseq [3]

Mature cel-miR-797-3p

• Accession: MIMAT0015241
• Description: Caenorhabditis elegans cel-miR-797-3p mature miRNA
• Sequence: 56 - UUUUCAUUGGUUUCUGUGAAAU - 77
• Evidence: experimental ; CLIPseq [3]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179