Stem-loop cel-mir-798

Accession

MI0005199

Description

Caenorhabditis elegans cel-mir-798 precursor miRNA

Sequence

370 reads, 9 reads per million, 15 experiments

uacuguuucauguagguguuaaaguuuguacaagaaguuaguuuucuguUAAGCCUUACAUAUUGACUGAgcagua
(((((((.((.((.((((((((.(((((.(((.((((.....)))))))))))).))).))))).)))))))))))

Structure

       u  u  a     -   a     u   a    u 
uacuguu ca gu ggugu uaa guuug aca gaag u
||||||| || || ||||| ||| ||||| ||| |||| a
augacgA GU CA UUAUA AUU CGAAU ugu cuuu g
       -  -  G     C   C     -   -    u 

Annotation confidence Low

Genome context

chrIV: 14277312-14277387 [-]

Mature cel-miR-798

• Accession: MIMAT0004233
• Description: Caenorhabditis elegans cel-miR-798 mature miRNA
• Sequence: 50 - UAAGCCUUACAUAUUGACUGA - 70
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54