Stem-loop cel-mir-800

Accession

MI0005201

Description

Caenorhabditis elegans cel-mir-800 precursor miRNA

Sequence

266 reads, 3 reads per million, 10 experiments

acggcggcUGACAAUUUCCGAGUUAGGCCAcucuuauaaucagugGCCAAACUCGGAAAUUGUCUGCcgccgu
((((((((.(((((((((((((((.(((((((.........))))))).))))))))))))))).))))))))

Structure

        U               A       cuu 
acggcggc GACAAUUUCCGAGUU GGCCAcu   a
|||||||| ||||||||||||||| |||||||   u
ugccgcCG CUGUUAAAGGCUCAA CCGguga   a
        U               A       cua 

Annotation confidence Medium

Genome context

chrX: 380919-380991 [-]

Mature cel-miR-800-3p

• Accession: MIMAT0004235
• Description: Caenorhabditis elegans cel-miR-800-3p mature miRNA
• Sequence: 46 - GCCAAACUCGGAAAUUGUCUGC - 67
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature cel-miR-800-5p

• Accession: MIMAT0020354
• Description: Caenorhabditis elegans cel-miR-800-5p mature miRNA
• Sequence: 9 - UGACAAUUUCCGAGUUAGGCCA - 30
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577