Stem-loop mdo-mir-30a

Accession

MI0005277

Description

Monodelphis domestica mdo-mir-30a precursor miRNA

Sequence

2905206 reads, 54205.0 reads per million, 5 experiments

gcggcUGUAAACAUCCUCGACUGGAAGCugugaagcagcagauggggCUUUCAGUCGGAUGUUUGCAGCugc
((((((((((((((((..(((((((((((.(............).)))))))))))))))))))))))))))

Structure

                UC           g gaagc 
gcggcUGUAAACAUCC  GACUGGAAGCu u     a
||||||||||||||||  ||||||||||| |      
cguCGACGUUUGUAGG  CUGACUUUCgg g     g
                --           g uagac 

Annotation confidence High

Genome context

ref|NC_077228.1|: 321932380-321932451 [-]

Mature mdo-miR-30a-5p

• Accession: MIMAT0004093
• Description: Monodelphis domestica mdo-miR-30a-5p mature miRNA
• Sequence: 6 - UGUAAACAUCCUCGACUGGAAGC - 28
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-30a-3p

• Accession: MIMAT0026652
• Description: Monodelphis domestica mdo-miR-30a-3p mature miRNA
• Sequence: 48 - CUUUCAGUCGGAUGUUUGCAGC - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45