Stem-loop mdo-mir-34a

Accession

MI0005280

Description

Monodelphis domestica mdo-mir-34a precursor miRNA

Sequence

3057 reads, 60 reads per million, 5 experiments

ggccagcugugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUUgugaguaauagauaaggaagcAAUCAGCAAGUAUACUGCCCUAgaagugcugcacguuguuaggccc
((((((((((((((((((((..(((((((((((.((((((((((..................))))))))))))).))))))))..))))))))).))))..))).)))).

Structure

-    -   --    -         uU        -   A          gugaguaa 
 ggcc agc  ugug aguguuucu  GGCAGUGU CUU GCUGGUUGUU        u
 |||| |||  |||| |||||||||  |||||||| ||| ||||||||||         
 ccgg uug  gcac ucgugaagA  CCGUCAUA GAA CGACUAAcga        a
c    a   uu    g         UC        U   -          aggaauag 

Annotation confidence Medium

Genome context

chr4: 433575257-433575367 [+]

Mature mdo-miR-34a-5p

• Accession: MIMAT0004096
• Description: Monodelphis domestica mdo-miR-34a-5p mature miRNA
• Sequence: 22 - UGGCAGUGUCUUAGCUGGUUGUU - 44
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-34a-3p

• Accession: MIMAT0026655
• Description: Monodelphis domestica mdo-miR-34a-3p mature miRNA
• Sequence: 66 - AAUCAGCAAGUAUACUGCCCUA - 87
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45