Stem-loop mdo-mir-125b-1

Accession

MI0005291

Description

Monodelphis domestica mdo-mir-125b-1 precursor miRNA

Sequence

129640 reads, 2166 reads per million, 5 experiments

acuuuuccuagUCCCUGAGACCCUAACUUGUGAggcuuuucagcgacaaccACAGGUCAGGCUCUUGGGACCUaggcggagg
.((((.(((((((((.((((.(((.(((((((..(((....)))......))))))).))).)))))))).))))).)))).

Structure

a    u     -    U    C   A       ----Ag   u 
 cuuu ccuag UCCC GAGA CCU ACUUGUG      gcu u
 |||| ||||| |||| |||| ||| |||||||      |||  
 gagg ggaUC AGGG UUCU GGA UGGACAc      cga u
g    c     C    -    C   C       caacag   c 

Annotation confidence Medium

Genome context

chr4: 1003541-1003622 [+]

Mature mdo-miR-125b-5p

• Accession: MIMAT0004103
• Description: Monodelphis domestica mdo-miR-125b-5p mature miRNA
• Sequence: 12 - UCCCUGAGACCCUAACUUGUGA - 33
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-125b-1-3p

• Accession: MIMAT0026661
• Description: Monodelphis domestica mdo-miR-125b-1-3p mature miRNA
• Sequence: 52 - ACAGGUCAGGCUCUUGGGACCU - 73
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45