Stem-loop mdo-mir-128a

Accession

MI0005293

Description

Monodelphis domestica mdo-mir-128a precursor miRNA

Sequence

118267 reads, 1758 reads per million, 5 experiments

ugugcagcaggaagGGGGGCCGUUACACUGUCAGAGAgugaguagcaggucUCACAGUGAACCGGUCUCUUUcccugcuguggc
...((((((((.((((((((((...((((((..((((.(........).))))))))))...)))))))))).))))))))...

Structure

ugu        a          UUA      CA    g gag 
   gcagcagg agGGGGGCCG   CACUGU  GAGA u   u
   |||||||| ||||||||||   ||||||  |||| |    
   ugucgucc UUUCUCUGGC   GUGACA  CUcu g   a
cgg        c          CAA      --    g acg 

Annotation confidence Medium

Genome context

chr6: 290241098-290241181 [-]

Mature mdo-miR-128a-3p

• Accession: MIMAT0004104
• Description: Monodelphis domestica mdo-miR-128a-3p mature miRNA
• Sequence: 52 - UCACAGUGAACCGGUCUCUUU - 72
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-128a-5p

• Accession: MIMAT0026662
• Description: Monodelphis domestica mdo-miR-128a-5p mature miRNA
• Sequence: 15 - GGGGGCCGUUACACUGUCAGAGA - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45