Stem-loop mdo-mir-133a-1

Accession

MI0005296

Description

Monodelphis domestica mdo-mir-133a-1 precursor miRNA

Sequence

12918 reads, 275 reads per million, 5 experiments

caaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaccuauucaauggauUUGGUCCCCUUCAACCAGCUGUagcuaugcauuga
((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).

Structure

-      uuu    a       AA  U  A        accua 
 caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

Annotation confidence High

Genome context

chr3: 263368065-263368151 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-133a-1

Mature mdo-miR-133a-3p

• Accession: MIMAT0004107
• Description: Monodelphis domestica mdo-miR-133a-3p mature miRNA
• Sequence: 53 - UUGGUCCCCUUCAACCAGCUGU - 74
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-133a-1-5p

• Accession: MIMAT0026665
• Description: Monodelphis domestica mdo-miR-133a-1-5p mature miRNA
• Sequence: 15 - AGCUGGUAAAAUGGAACCAAAU - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45