Stem-loop mdo-mir-135b

Accession

MI0005298

Description

Monodelphis domestica mdo-mir-135b precursor miRNA

Sequence

706 reads, 11 reads per million, 5 experiments

agcucucugcuguggccUAUGGCUUUUCAUUCCUAUGUGauugcuguucccaacucAUGUAGGGCUAAAAGCCAUGGGcuacagggaggggagagccucc
.(((((((.((((((((((((((((((...(((((((((((((.......))).))))))))))..))))))))))))))))....)).)))))))....

Structure

---a       g  ----                CAU          -   cu 
    gcucucu cu    guggccUAUGGCUUUU   UCCUAUGUGa uug  g
    ||||||| ||    ||||||||||||||||   |||||||||| |||  u
    cgagagg ga    caucGGGUACCGAAAA   GGGAUGUAcu aac  u
ccuc       g  ggga                -UC          c   cc 

Annotation confidence High

Genome context

chr2: 111348471-111348570 [-]

Mature mdo-miR-135b-5p

• Accession: MIMAT0004109
• Description: Monodelphis domestica mdo-miR-135b-5p mature miRNA
• Sequence: 18 - UAUGGCUUUUCAUUCCUAUGUG - 39
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-135b-3p

• Accession: MIMAT0026667
• Description: Monodelphis domestica mdo-miR-135b-3p mature miRNA
• Sequence: 57 - AUGUAGGGCUAAAAGCCAUGGG - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45