Stem-loop mdo-mir-138-1

Accession

MI0005300

Description

Monodelphis domestica mdo-mir-138-1 precursor miRNA

Sequence

29799 reads, 663.0 reads per million, 5 experiments

guugcugcAGCUGGUGUUGUGAAUCAGGCCGAcaagcagcucauccuauuacccgGCUAUUUCACUACACCAGGGUugcauca
(.(((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).))).).

Structure

- u   u  AG       U     UCA     Acaagcagcu 
 g ugc gc  CUGGUGU GUGAA   GGCCG          c
 | ||| ||  ||||||| |||||   |||||           
 c acg UG  GACCACA CACUU   UCGgc          a
a u   u  -G       U     -UA     ccauuauccu 

Annotation confidence High

Genome context

ref|NC_077227.1|: 454853897-454853979 [+]

Mature mdo-miR-138-1-5p

• Accession: MIMAT0004111
• Description: Monodelphis domestica mdo-miR-138-1-5p mature miRNA
• Sequence: 9 - AGCUGGUGUUGUGAAUCAGGCCGA - 32
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-miR-138-3p

• Accession: MIMAT0051597
• Description: Monodelphis domestica mdo-miR-138-3p mature miRNA
• Sequence: 56 - GCUAUUUCACUACACCAGGGU - 76
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72