Stem-loop mdo-mir-138

Accession

MI0005300

Description

Monodelphis domestica mdo-mir-138 precursor miRNA

Sequence

22542 reads, 361 reads per million, 5 experiments

guugcugcAGCUGGUGUUGUGAAUCaggccgacaagcagcucauccuauuacccggcuauuucacuacaccaggguugcauca
(.(((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).))).).

Structure

- u   u  AG       U     UCa     acaagcagcu 
 g ugc gc  CUGGUGU GUGAA   ggccg          c
 | ||| ||  ||||||| |||||   |||||           
 c acg ug  gaccaca cacuu   ucggc          a
a u   u  -g       u     -ua     ccauuauccu 

Annotation confidence Not enough data

Genome context

chr1: 447811941-447812023 [+]

Mature mdo-miR-138

• Accession: MIMAT0004111
• Description: Monodelphis domestica mdo-miR-138 mature miRNA
• Sequence: 9 - AGCUGGUGUUGUGAAUC - 25
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72