Stem-loop mdo-mir-142

Accession

MI0005301

Description

Monodelphis domestica mdo-mir-142 precursor miRNA

Literature search

1 open access papers mention mdo-mir-142
(1 sentences)

Sequence

30747 reads, 642.0 reads per million, 5 experiments

gcagucaCCCAUAAAGUAGAAAGCACUACuaacagcaauguagggUGUAGUGUUUCCUACUUUAUGGAugagug
.((.(((.(((((((((((.(((((((((..(((....))).....))))))))).))))))))))).))).))

Structure

g  g   C           A         ---ua   g 
 ca uca CCAUAAAGUAG AAGCACUAC     aca c
 || ||| ||||||||||| |||||||||     |||  
 gu agu GGUAUUUCAUC UUUGUGAUG     ugu a
-  g   A           C         Uggga   a 

Annotation confidence High

Genome context

ref|NC_077228.1|: 181206532-181206605 [+]

Mature mdo-miR-142-5p

• Accession: MIMAT0051598
• Description: Monodelphis domestica mdo-miR-142-5p mature miRNA
• Sequence: 8 - CCCAUAAAGUAGAAAGCACUAC - 29
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-miR-142-3p

• Accession: MIMAT0004112
• Description: Monodelphis domestica mdo-miR-142-3p mature miRNA
• Sequence: 46 - UGUAGUGUUUCCUACUUUAUGGA - 68
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72