Stem-loop mdo-mir-142

Accession

MI0005301

Description

Monodelphis domestica mdo-mir-142 precursor miRNA

Sequence

29515 reads, 448 reads per million, 5 experiments

gcagucacccauaaaguagaaagcacuacuaacagcaauguagggUGUAGUGUUUCCUACUUUAUGGAugagug
.((.(((.(((((((((((.(((((((((..(((....))).....))))))))).))))))))))).))).))

Structure

g  g   c           a         ---ua   g 
 ca uca ccauaaaguag aagcacuac     aca c
 || ||| ||||||||||| |||||||||     |||  
 gu agu GGUAUUUCAUC UUUGUGAUG     ugu a
-  g   A           C         Uggga   a 

Annotation confidence Not enough data

Genome context

chr2: 174133935-174134008 [+]

Mature mdo-miR-142

• Accession: MIMAT0004112
• Description: Monodelphis domestica mdo-miR-142 mature miRNA
• Sequence: 46 - UGUAGUGUUUCCUACUUUAUGGA - 68
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72