Stem-loop mdo-mir-144

Accession

MI0005303

Description

Monodelphis domestica mdo-mir-144 precursor miRNA

Sequence

50022 reads, 741 reads per million, 5 experiments

cggggcccaggccgGGAUAUCAUCGUAUACUGUAAGUuugcaaugagacacUACAGUAUAGAUGAUGUACUGGcgagggccgccu
.(((((((..(((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))..))))).)).

Structure

c  -     ag     G        G         -A    gc 
 gg ggccc  gccgG AUAUCAUC UAUACUGUA  GUuu  a
 || |||||  ||||| |||||||| |||||||||  ||||   
 cc ccggg  cGGUC UGUAGUAG AUAUGACAU  caga  a
u  g     ag     A        -         ca    gu 

Annotation confidence High

Genome context

chr2: 506777490-506777574 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-144

Mature mdo-miR-144-3p

• Accession: MIMAT0004114
• Description: Monodelphis domestica mdo-miR-144-3p mature miRNA
• Sequence: 52 - UACAGUAUAGAUGAUGUACUGG - 73
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-144-5p

• Accession: MIMAT0026669
• Description: Monodelphis domestica mdo-miR-144-5p mature miRNA
• Sequence: 15 - GGAUAUCAUCGUAUACUGUAAGU - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45