Stem-loop mdo-mir-182

Accession

MI0005307

Description

Monodelphis domestica mdo-mir-182 precursor miRNA

Literature search

2 open access papers mention mdo-mir-182
(3 sentences)

Sequence

31803 reads, 663.0 reads per million, 5 experiments

gcugugUUUGGCAAUGGUAGAACUCACACUggugagauaauggaauccGGUGGUUCUAGACUUGCCAACUA
.......(((((((...((((((...((((((..............))))))))))))...)))))))...

Structure

gcugugU       UGG      UCA      ugagau 
       UUGGCAA   UAGAAC   CACUgg      a
       |||||||   ||||||   ||||||       
       AACCGUU   AUCUUG   GUGGcc      a
----AUC       CAG      ---      uaaggu 

Annotation confidence High

Genome context

ref|NC_077234.2|: 201899987-201900057 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-182

Mature mdo-miR-182-5p

• Accession: MIMAT0004118
• Description: Monodelphis domestica mdo-miR-182-5p mature miRNA
• Sequence: 7 - UUUGGCAAUGGUAGAACUCACACU - 30
• Evidence: experimental ; PCR [1], Illumina [2]

Mature mdo-miR-182-3p

• Accession: MIMAT0026672
• Description: Monodelphis domestica mdo-miR-182-3p mature miRNA
• Sequence: 49 - GGUGGUUCUAGACUUGCCAACUA - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45