Stem-loop mdo-mir-193a

Accession

MI0005312

Description

Monodelphis domestica mdo-mir-193a precursor miRNA

Sequence

4211 reads, 88.0 reads per million, 5 experiments

gaggauUGGGUCUUUGUGGGCGAGAUGAgggugucaguucAACUGGCCUACAAAGUCCCAGUucuc
((((((((((.((((((((((.((.((((........)))).)).)))))))))).))))))))))

Structure

          U          G  A    ggu 
gaggauUGGG CUUUGUGGGC AG UGAg   g
|||||||||| |||||||||| || ||||    
cucuUGACCC GAAACAUCCG UC Acuu   u
          U          G  A    gac 

Annotation confidence High

Genome context

ref|NC_077228.1|: 504777028-504777093 [-]

Mature mdo-miR-193a-5p

• Accession: MIMAT0026677
• Description: Monodelphis domestica mdo-miR-193a-5p mature miRNA
• Sequence: 7 - UGGGUCUUUGUGGGCGAGAUGA - 28
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-193a-3p

• Accession: MIMAT0004123
• Description: Monodelphis domestica mdo-miR-193a-3p mature miRNA
• Sequence: 41 - AACUGGCCUACAAAGUCCCAGU - 62
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45