Stem-loop mdo-mir-204-1

Accession

MI0005316

Description

Monodelphis domestica mdo-mir-204-1 precursor miRNA

Sequence

3753 reads, 79.0 reads per million, 5 experiments

caacugacuaugugaccugugggcUUCCCUUUGUCAUCCUAUGCCUggaaaucagagugggGCAGGGACAGCAAAGGGAUGCucagcugucgucuuc
.....(((.....(((...(((((.(((((((((..((((.(((((.(.........).)))))))))..))))))))).)))))...))))))...

Structure

caacu   uaugu   cug     U         CA    A     g aaa 
     gac     gac   ugggc UCCCUUUGU  UCCU UGCCU g   u
     |||     |||   ||||| |||||||||  |||| ||||| |   c
     cug     cug   acuCG AGGGAAACG  AGGG ACGgg u   a
--cuu   -----   ucg     U         AC    -     g gag 

Annotation confidence High

Genome context

ref|NC_077227.1|: 147022069-147022165 [-]

Mature mdo-miR-204-1-5p

• Accession: MIMAT0004127
• Description: Monodelphis domestica mdo-miR-204-1-5p mature miRNA
• Sequence: 25 - UUCCCUUUGUCAUCCUAUGCCU - 46
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-miR-204-3p

• Accession: MIMAT0061146
• Description: Monodelphis domestica mdo-miR-204-3p mature miRNA
• Sequence: 62 - GCAGGGACAGCAAAGGGAUGC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72