Stem-loop mdo-mir-218-1

Accession

MI0005322

Description

Monodelphis domestica mdo-mir-218-1 precursor miRNA

Sequence

6078 reads, 93 reads per million, 5 experiments

ugauuauguggcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugugagguaugaguaaaacAUGGUUCUGUCAAGCACCAUGgaacgucacgcagcuuucuaca
.......((.(((.(((.((((((.(((((((((..((((((((.....(.(....).).....))))))))..))))))))).)))))).))).))).))........

Structure

-ugauuau  g   a   u      U         CU        gguug g g 
        gu gcg gau uucugU GUGCUUGAU  AACCAUGU     u a g
        || ||| ||| |||||| |||||||||  ||||||||     | |  
        cg cgc cug aagGUA CACGAACUG  UUGGUAca     a u u
acaucuuu  a   a   c      C         UC        aaaug g a 

Annotation confidence Low

Genome context

chr5: 208287227-208287335 [-]

Mature mdo-miR-218-5p

• Accession: MIMAT0004133
• Description: Monodelphis domestica mdo-miR-218-5p mature miRNA
• Sequence: 24 - UUGUGCUUGAUCUAACCAUGU - 44
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-218-1-3p

• Accession: MIMAT0026680
• Description: Monodelphis domestica mdo-miR-218-1-3p mature miRNA
• Sequence: 67 - AUGGUUCUGUCAAGCACCAUG - 87
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45