Stem-loop mdo-mir-15a

Accession

MI0005333

Description

Monodelphis domestica mdo-mir-15a precursor miRNA

Sequence

3413 reads, 55 reads per million, 5 experiments

ccuugggguaaagUAGCAGCACAUAAUGGUUUGUUgguuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCAaaaauacaagg
(((((.......(..((((((((..(((((((((...(((...)))...)))))))))..))))))))..).......)))))

Structure

     ggguaaa UA        UA         Ugg   u 
ccuug       g  GCAGCACA  AUGGUUUGU   uuu  
|||||       |  ||||||||  |||||||||   ||| g
ggaac       C  CGUCGUGU  UACCGGACg   aaa  
     auaaaaA UC        UA         ugg   a 

Annotation confidence Low

Genome context

chr4: 318199416-318199498 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-15a

Mature mdo-miR-15a-5p

• Accession: MIMAT0004144
• Description: Monodelphis domestica mdo-miR-15a-5p mature miRNA
• Sequence: 14 - UAGCAGCACAUAAUGGUUUGUU - 35
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-15a-3p

• Accession: MIMAT0026689
• Description: Monodelphis domestica mdo-miR-15a-3p mature miRNA
• Sequence: 51 - CAGGCCAUAUUGUGCUGCCUCA - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45