Stem-loop mdo-mir-16-1

Accession

MI0005334

Description

Monodelphis domestica mdo-mir-16-1 precursor miRNA

Sequence

19803 reads, 361 reads per million, 5 experiments

gucaacagugccuUAGCAGCACGUAAAUAUUGGCGuuaagauuuuaaaaguaucuCCAGUAUUAACUGUGCUGCUGAAguaagguuggcc
((((((..(((.((((((((((((.((((((((.....((((.........)))))))))))).)).)))))))))).)))..)))))).

Structure

-      ag   c          -  A        CGuua    uuu 
 gucaac  ugc uUAGCAGCAC GU AAUAUUGG     agau   a
 ||||||  ||| |||||||||| || ||||||||     ||||   a
 cgguug  aug AGUCGUCGUG CA UUAUGACC     ucua   a
c      ga   A          U  A        -----    uga 

Annotation confidence Medium

Genome context

chr4: 318199560-318199649 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-16-1

Mature mdo-miR-16-5p

• Accession: MIMAT0004145
• Description: Monodelphis domestica mdo-miR-16-5p mature miRNA
• Sequence: 14 - UAGCAGCACGUAAAUAUUGGCG - 35
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-16-1-3p

• Accession: MIMAT0026690
• Description: Monodelphis domestica mdo-miR-16-1-3p mature miRNA
• Sequence: 56 - CCAGUAUUAACUGUGCUGCUGAA - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45