Stem-loop mdo-mir-96

Accession

MI0005336

Description

Monodelphis domestica mdo-mir-96 precursor miRNA

Literature search

1 open access papers mention mdo-mir-96
(31 sentences)

Sequence

604 reads, 21.0 reads per million, 3 experiments

gaugucugcuuggcccguUUUGGCACUAGCACAUUUUUGCUucugucucucugcucugagCAAUCAUGUGUAGUGCCAAUAUgggaaaagcaagaug
...((((((((..(((((.(((((((((.(((((..((((((..((......))...))))))..)))))))))))))).)))))..)))).)))).

Structure

gau    -    gg     U         G     UU      -cu  cu 
   gucu gcuu  cccgu UUGGCACUA CACAU  UUGCUu   gu  c
   |||| ||||  ||||| ||||||||| |||||  ||||||   ||   
   uaga cgaa  gggUA AACCGUGAU GUGUA  AACgag   cg  u
--g    a    aa     U         -     CU      ucu  uc 

Annotation confidence High

Genome context

ref|NC_077234.2|: 201907224-201907320 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-96

Mature mdo-miR-96-5p

• Accession: MIMAT0004147
• Description: Monodelphis domestica mdo-miR-96-5p mature miRNA
• Sequence: 19 - UUUGGCACUAGCACAUUUUUGCU - 41
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-miR-96-3p

• Accession: MIMAT0061147
• Description: Monodelphis domestica mdo-miR-96-3p mature miRNA
• Sequence: 61 - CAAUCAUGUGUAGUGCCAAUAU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72