Stem-loop mdo-mir-132

Accession

MI0005338

Description

Monodelphis domestica mdo-mir-132 precursor miRNA

Literature search

1 open access papers mention mdo-mir-132
(4 sentences)

Sequence

32637 reads, 694.0 reads per million, 5 experiments

gggcaACCGUGGCUUUCGAUUGUUACUgugggaaccaggggUAACAGUCUACAGCCAUGGUCGccc
((((.(((((((((...((((((((((.(((...)))..))))))))))...))))))))).))))

Structure

    a         UUC          -g   g 
gggc ACCGUGGCU   GAUUGUUACU  ugg  
|||| |||||||||   ||||||||||  ||| a
cccG UGGUACCGA   CUGACAAUgg  acc  
    C         CAU          gg   a 

Annotation confidence High

Genome context

ref|NC_077228.1|: 511420823-511420888 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-132

Mature mdo-miR-132-5p

• Accession: MIMAT0026693
• Description: Monodelphis domestica mdo-miR-132-5p mature miRNA
• Sequence: 6 - ACCGUGGCUUUCGAUUGUUACU - 27
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-132-3p

• Accession: MIMAT0004149
• Description: Monodelphis domestica mdo-miR-132-3p mature miRNA
• Sequence: 42 - UAACAGUCUACAGCCAUGGUCG - 63
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45