Stem-loop mdo-mir-181b-1

Accession

MI0005344

Description

Monodelphis domestica mdo-mir-181b-1 precursor miRNA

Sequence

140348 reads, 2467 reads per million, 5 experiments

aaggucacaaucAACAUUCAUUGCUGUCGGUGGGUuuaacuguauggacaagcUCACUGAACAAUGAAUGCAACuguggccccacuu
..(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))))))......

Structure

----aa       aucAA         CUG           aa  g 
      ggucaca     CAUUCAUUG   UCGGUGGGUuu  cu u
      |||||||     |||||||||   |||||||||||  ||  
      ccggugu     GUAAGUAAC   AGUCACUcgaa  gg a
uucacc       -CAAC         --A           ca  u 

Annotation confidence Medium

Genome context

chr2: 99872867-99872953 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-181b-1

Mature mdo-miR-181b-5p

• Accession: MIMAT0004155
• Description: Monodelphis domestica mdo-miR-181b-5p mature miRNA
• Sequence: 13 - AACAUUCAUUGCUGUCGGUGGGU - 35
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-181b-1-3p

• Accession: MIMAT0026699
• Description: Monodelphis domestica mdo-miR-181b-1-3p mature miRNA
• Sequence: 54 - UCACUGAACAAUGAAUGCAAC - 74
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45