Stem-loop mdo-mir-221

Accession

MI0005348

Description

Monodelphis domestica mdo-mir-221 precursor miRNA

Sequence

55507 reads, 932 reads per million, 5 experiments

gcaugaACCUGGCAUACAAUGUAGAAUUCUGUguuuauuaaguaacAGCUACAUUGUCUGCUGGGUUUCaggcu
((.(((((((((((.(((((((((....((((............))))))))))))).))))))).)))).)).

Structure

-  a    -       U         AAUU    guuua 
 gc ugaA CCUGGCA ACAAUGUAG    CUGU     u
 || |||| ||||||| |||||||||    ||||      
 cg aCUU GGGUCGU UGUUACAUC    GAca     u
u  g    U       C         ----    augaa 

Annotation confidence High

Genome context

chr4: 17427280-17427353 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-221

Mature mdo-miR-221-3p

• Accession: MIMAT0004160
• Description: Monodelphis domestica mdo-miR-221-3p mature miRNA
• Sequence: 47 - AGCUACAUUGUCUGCUGGGUUUC - 69
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-221-5p

• Accession: MIMAT0026701
• Description: Monodelphis domestica mdo-miR-221-5p mature miRNA
• Sequence: 7 - ACCUGGCAUACAAUGUAGAAUUCUGU - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45