Stem-loop mdo-mir-29b-1

Accession

MI0005352

Description

Monodelphis domestica mdo-mir-29b-1 precursor miRNA

Sequence

60713 reads, 912 reads per million, 5 experiments

gcuucuucaggaaGCUGGUUUCAUAUGGUGGUUUAGAuuuaacuacugagugucUAGCACCAUUUGAAAUCAGUGUucuuggagga
..(((((((((((((((((((((.((((((.(..(.(((((.....))))).)..).)))))).)))))))))).)))))))))))

Structure

gc           -          U      G UU G     a 
  uucuucaggaa GCUGGUUUCA AUGGUG U  A Auuua c
  ||||||||||| |||||||||| |||||| |  | ||||| u
  aggagguucuU UGACUAAAGU UACCAC A  u ugagu a
--           G          U      G Uc g     c 

Annotation confidence Medium

Genome context

chr8: 190600820-190600905 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-29b-1

Mature mdo-miR-29b-3p

• Accession: MIMAT0004163
• Description: Monodelphis domestica mdo-miR-29b-3p mature miRNA
• Sequence: 55 - UAGCACCAUUUGAAAUCAGUGU - 76
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-29b-1-5p

• Accession: MIMAT0026703
• Description: Monodelphis domestica mdo-miR-29b-1-5p mature miRNA
• Sequence: 14 - GCUGGUUUCAUAUGGUGGUUUAGA - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45