Stem-loop mdo-mir-29a-1

Accession

MI0005353

Description

Monodelphis domestica mdo-mir-29a-1 precursor miRNA

Sequence

34153 reads, 548 reads per million, 5 experiments

augaCUGAUUUCUUUUGGUGUUCAGAgucaauaucauuuucUAGCACCAUUUGAAAUCGGUUau
((((((((((((...(((((((.((((...........)))))))))))...))))))))))))

Structure

            UUU       C    ucaa 
augaCUGAUUUC   UGGUGUU AGAg    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA Ucuu    u
            UUU       -    uuac 

Annotation confidence Medium

Genome context

chr8: 190600409-190600472 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-29a-1

Mature mdo-miR-29a-3p

• Accession: MIMAT0004164
• Description: Monodelphis domestica mdo-miR-29a-3p mature miRNA
• Sequence: 42 - UAGCACCAUUUGAAAUCGGUU - 62
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-29a-1-5p

• Accession: MIMAT0026704
• Description: Monodelphis domestica mdo-miR-29a-1-5p mature miRNA
• Sequence: 5 - CUGAUUUCUUUUGGUGUUCAGA - 26
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45