Stem-loop mdo-mir-92a-1

Accession

MI0005359

Description

Monodelphis domestica mdo-mir-92a-1 precursor miRNA

Sequence

56189 reads, 992 reads per million, 5 experiments

cuuucuacacAGGUUGGGAUCAGUUGCAAUGCUgugucugucuguagUAUUGCACUUGUCCCGGCCUGUugaguuugg
....((..((((((((((((.(((.(((((((((.(.....)..)))))))))))).))))))))))))..)).....

Structure

-cuuu  ac            C   U         -u u 
     cu  acAGGUUGGGAU AGU GCAAUGCUg  g c
     ||  |||||||||||| ||| |||||||||  | u
     ga  UGUCCGGCCCUG UCA CGUUAUgau  c g
gguuu  gu            U   -         gu u 

Annotation confidence Medium

Genome context

chr7: 108468191-108468268 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdo-mir-92a-1

Mature mdo-miR-92a-3p

• Accession: MIMAT0004171
• Description: Monodelphis domestica mdo-miR-92a-3p mature miRNA
• Sequence: 48 - UAUUGCACUUGUCCCGGCCUGU - 69
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-92a-1-5p

• Accession: MIMAT0026709
• Description: Monodelphis domestica mdo-miR-92a-1-5p mature miRNA
• Sequence: 11 - AGGUUGGGAUCAGUUGCAAUGCU - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45