Stem-loop mdo-let-7a-1

Accession

MI0005360

Description

Monodelphis domestica mdo-let-7a-1 precursor miRNA

Sequence

2803701 reads, 55233.0 reads per million, 5 experiments

ucuccacugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucacacccaccacugggagauaaCUAUACAAUCUACUGUCUUUCUuaaag
......((.(((((.(((((((((((((((((((((.....(((...((((....)))).))))))))))))))))))))))))))))).))

Structure

ucucca  g     U                     uuagg   aca    c 
      cu uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca c
      || ||||| |||||||||||||||||||||     |||   ||||  
      ga auUCU UUCUGUCAUCUAACAUAUCaa     uag   gggu a
------  a     -                     -----   --a    c 

Annotation confidence High

Genome context

ref|NC_077232.2|: 227504825-227504916 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-let-7a-1

Mature mdo-let-7a-5p

• Accession: MIMAT0004141
• Description: Monodelphis domestica mdo-let-7a-5p mature miRNA
• Sequence: 15 - UGAGGUAGUAGGUUGUAUAGUU - 36
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-let-7a-1-3p

• Accession: MIMAT0061142
• Description: Monodelphis domestica mdo-let-7a-1-3p mature miRNA
• Sequence: 66 - CUAUACAAUCUACUGUCUUUCU - 87
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72