Stem-loop mdo-let-7f-1

Accession

MI0005361

Description

Monodelphis domestica mdo-let-7f-1 precursor miRNA

Sequence

1751649 reads, 27830 reads per million, 5 experiments

ucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCCuga
((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))

Structure

    a U                       ---------       u 
ucag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| | |||||||||||||||||||||||         ||||||| a
aguC C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
    - C                       gaggacuug       u 

Annotation confidence Low

Genome context

chr6: 256412444-256412530 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-let-7f-1

Mature mdo-let-7f-5p

• Accession: MIMAT0004161
• Description: Monodelphis domestica mdo-let-7f-5p mature miRNA
• Sequence: 7 - UGAGGUAGUAGAUUGUAUAGUU - 28
• Evidence: experimental ; PCR [1], Illumina [2]

Mature mdo-let-7f-1-3p

• Accession: MIMAT0026702
• Description: Monodelphis domestica mdo-let-7f-1-3p mature miRNA
• Sequence: 63 - CUAUACAAUCUAUUGCCUUCCC - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45