Stem-loop mdo-let-7d

Accession

MI0005362

Description

Monodelphis domestica mdo-let-7d precursor miRNA

Sequence

84233 reads, 1721.0 reads per million, 5 experiments

aaugggcuccuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcccacaaggaguuaaCUAUACAACCUGCUGCCUUUCUuagggcucuauuauu
...((((.(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).))))))))))))))))))))))))).......

Structure

----aau    u       A              C      -------uua      g 
       gggc ccuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
       |||| ||||||| |||||||||||||| ||||||          |||||| a
       cucg ggauUCU UUCCGUCGUCCAAC UAUCaa          cccguu u
uuauuau    -       -              A      uugaggaaca      u 

Annotation confidence High

Genome context

ref|NC_077232.2|: 227510388-227510493 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-let-7d

Mature mdo-let-7d-5p

• Accession: MIMAT0061144
• Description: Monodelphis domestica mdo-let-7d-5p mature miRNA
• Sequence: 70 - CUAUACAACCUGCUGCCUUUCU - 91
• Evidence: experimental ; PCR [1]

Mature mdo-let-7d-3p

• Accession: MIMAT0004172
• Description: Monodelphis domestica mdo-let-7d-3p mature miRNA
• Sequence: 16 - AGAGGUAGUAGGUUGCAUAGUU - 37
• Evidence: experimental ; PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72