Stem-loop mdo-mir-27a

Accession

MI0005364

Description

Monodelphis domestica mdo-mir-27a precursor miRNA

Sequence

30170 reads, 470 reads per million, 5 experiments

uggcuugaggagcAGGACUUAGCUGCCUUGUGAACAgagucagcaucauauugugUUCACAGUGGCUAAGUUCCGCuccccuugcc
.(((..(.(((((.((((((((((((..((((((((.(((.........))).)))))))))))))))))))).))))).)..)))

Structure

u   uu a     A            CU        g   cag 
 ggc  g ggagc GGACUUAGCUGC  UGUGAACA agu   c
 |||  | ||||| ||||||||||||  |||||||| |||   a
 ccg  c ccuCG CUUGAAUCGGUG  ACACUUgu uua   u
-   uu c     C            --        g   uac 

Annotation confidence Medium

Genome context

chr3: 446525995-446526080 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-27a

Mature mdo-miR-27a-3p

• Accession: MIMAT0004174
• Description: Monodelphis domestica mdo-miR-27a-3p mature miRNA
• Sequence: 56 - UUCACAGUGGCUAAGUUCCGC - 76
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-27a-5p

• Accession: MIMAT0026711
• Description: Monodelphis domestica mdo-miR-27a-5p mature miRNA
• Sequence: 14 - AGGACUUAGCUGCCUUGUGAACA - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45