Stem-loop mdo-mir-23b

Accession

MI0005366

Description

Monodelphis domestica mdo-mir-23b precursor miRNA

Sequence

60867 reads, 1113.0 reads per million, 5 experiments

ggcugcuUGGGUUCCUGGCAUGCUGAUUUgugacuuaagaugaaaAUCACAUUGCCAGGGAUUACCACgcagcc
((((((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))))))

Structure

      u   --          -  C      gugacu 
ggcugc UGG  GUUCCUGGCA UG UGAUUU      u
|||||| |||  |||||||||| || ||||||       
ccgacg ACC  UAGGGACCGU AC ACUAaa      a
      C   AU          U  -      aguaga 

Annotation confidence High

Genome context

ref|NC_077232.2|: 19998470-19998543 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-23b

Mature mdo-miR-23b-5p

• Accession: MIMAT0026713
• Description: Monodelphis domestica mdo-miR-23b-5p mature miRNA
• Sequence: 8 - UGGGUUCCUGGCAUGCUGAUUU - 29
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-23b-3p

• Accession: MIMAT0004176
• Description: Monodelphis domestica mdo-miR-23b-3p mature miRNA
• Sequence: 46 - AUCACAUUGCCAGGGAUUACCAC - 68
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45