Stem-loop mdo-mir-24-1

Accession

MI0005368

Description

Monodelphis domestica mdo-mir-24-1 precursor miRNA

Sequence

30028 reads, 517.0 reads per million, 5 experiments

cgcccuccggUGCCUACUGAGCUGAUAACAGUucugauuuuacacacUGGCUCAGUUCAGCAGGAACAGgagucg
....((((.((.(((.(((((((((...((((..((......)).))))..))))))))).))).)).))))...

Structure

cgcc    g  G   A         UAA    uc  au 
    cucc gU CCU CUGAGCUGA   CAGU  ug  u
    |||| || ||| |||||||||   ||||  ||   
    gagG CA GGA GACUUGACU   GUca  ac  u
-gcu    A  A   C         -CG    -c  au 

Annotation confidence High

Genome context

ref|NC_077232.2|: 19999069-19999143 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-24-1

Mature mdo-miR-24-1-5p

• Accession: MIMAT0051599
• Description: Monodelphis domestica mdo-miR-24-1-5p mature miRNA
• Sequence: 11 - UGCCUACUGAGCUGAUAACAGU - 32
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-miR-24-3p

• Accession: MIMAT0004175
• Description: Monodelphis domestica mdo-miR-24-3p mature miRNA
• Sequence: 48 - UGGCUCAGUUCAGCAGGAACAG - 69
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72