miRBase entry: mdo-mir-24-1

Stem-loop mdo-mir-24-1

Accession

MI0005368

Description

Monodelphis domestica mdo-mir-24-1 precursor miRNA

Sequence

850 reads, 13 reads per million, 5 experiments

ggugccuacugagcugauaacaguucugauuuuacacacUGGCUCAGUUCAGCAGga
....(((.(((((((((...((((..((......)).))))..))))))))).))).

Structure

ggug   a         uaa    uc  au 
    ccu cugagcuga   cagu  ug  u
    ||| |||||||||   ||||  ||   
    gGA GACUUGACU   GUca  ac  u
---a   C         -CG    -c  au

Annotation confidence Low

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Genome context

chr6: 17696508-17696564 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-24-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mdo-miR-24-3p

Accession	MIMAT0004175
Description	Monodelphis domestica mdo-miR-24-3p mature miRNA
Sequence	40 - UGGCUCAGUUCAGCAG - 55
Evidence	experimental Microarray [1], PCR [1]
Database links
Predicted targets

References

PubMed ID: 17965199
In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
"Devor EJ, Samollow PB"
"J Hered (2008) 99:66-72