Stem-loop cbr-mir-788

Accession

MI0005421

Description

Caenorhabditis briggsae cbr-mir-788 precursor miRNA

Literature search

1 open access papers mention cbr-mir-788
(1 sentences)

Sequence

2294 reads, 318.0 reads per million, 3 experiments

acuaacuuuUCCGCUUCUCAAUGCUCCAUUUGCAAaaucaaauugauuuucuugcAAAUGGGAUGAGAACCGGAAAcguuuga
...(((.((((((.((((((...(.(((((((((((((((...)))))...))))))))))).)))))).)))))).)))...

Structure

acu   u      C      AUG U          ---     a 
   aac uuUCCG UUCUCA   C CCAUUUGCAA   aauca  
   ||| |||||| ||||||   | ||||||||||   ||||| a
   uug AAAGGC AAGAGU   G GGUAAAcguu   uuagu  
agu   c      C      --A -          cuu     u 

Annotation confidence High

Genome context

chrX: 16382868-16382950 [+]

Mature cbr-miR-788-5p

• Accession: MIMAT0004289
• Description: Caenorhabditis briggsae cbr-miR-788-5p mature miRNA
• Sequence: 10 - UCCGCUUCUCAAUGCUCCAUUUGCAA - 35
• Evidence: not_experimental

Mature cbr-miR-788-3p

• Accession: MIMAT0053567
• Description: Caenorhabditis briggsae cbr-miR-788-3p mature miRNA
• Sequence: 56 - AAAUGGGAUGAGAACCGGAAA - 76
• Evidence: not_experimental

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207