miRBase entry: cbr-mir-790-2

Stem-loop cbr-mir-790-2

Accession

MI0005425

Description

Caenorhabditis briggsae cbr-mir-790-2 precursor miRNA

Sequence

gacugCUUGGCACUCGCGAACACCGCGgucgaaguuacucgcggaguuagccagugucaaccagaug
..(((.((((((((.((.(((.(((((((.......)).))))).))).)).)))))))).)))...

Structure

-ga   C        C  G   A     -  cg 
   cug UUGGCACU GC AAC CCGCG gu  a
   ||| |||||||| || ||| ||||| ||  a
   gac aacuguga cg uug ggcgc ca  g
gua   c        c  a   a     u  uu

Annotation confidence Not enough data

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Genome context

chrIV: 6048230-6048296 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbr-mir-790-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-790

Accession	MIMAT0004292
Description	Caenorhabditis briggsae cbr-miR-790 mature miRNA
Sequence	6 - CUUGGCACUCGCGAACACCGCG - 27
Evidence	not_experimental

References

PubMed ID: 17174894
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
"Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
"Cell (2006) 127:1193-1207