Stem-loop mmu-mir-871

Accession

MI0005471

Symbol

MGI: Mir871

Description

Mus musculus mmu-mir-871 precursor miRNA mir-743

Gene
family

RF04270; mir-743

Literature search

4 open access papers mention mmu-mir-871
(9 sentences)

Sequence

427531 reads, 5807 reads per million, 44 experiments

ugcagugcucUAUUCAGAUUAGUGCCAGUCAUGugaaauacauaUGACUGGCACCAUUCUGGAUAAUguaaugcuca
.(((.(((..((((((((...((((((((((((((.....))))))))))))))...))))))))..))).)))...

Structure

--u   g   uc        UUA              a 
   gca ugc  UAUUCAGA   GUGCCAGUCAUGug a
   ||| |||  ||||||||   |||||||||||||| a
   cgu aug  AUAGGUCU   CACGGUCAGUauac u
acu   a   UA        UAC              a 

Annotation confidence High

Genome context

chrX: 66810428-66810504 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mmu-mir-871

Mature mmu-miR-871-5p

• Accession: MIMAT0004841
• Description: Mus musculus mmu-miR-871-5p mature miRNA
• Sequence: 11 - UAUUCAGAUUAGUGCCAGUCAUG - 33
• Evidence: experimental ; cloned [1], 454 [2], Illumina [3-4]

Mature mmu-miR-871-3p

• Accession: MIMAT0017265
• Description: Mus musculus mmu-miR-871-3p mature miRNA
• Sequence: 45 - UGACUGGCACCAUUCUGGAUAAU - 67
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102