Stem-loop mtr-MIR169c

Accession

MI0005577

Description

Medicago truncatula mtr-MIR169c precursor miRNA

Literature search

12 open access papers mention mtr-MIR169c
(50 sentences)

Sequence

6579 reads, 44.0 reads per million, 109 experiments

gaaugCAGCCAAGGGUGAUUUGCCGGcagauauauaugaauauucauagagaugcauguguCGGCAAGUUCCUCUUGGCUACauu
.((((.(((((((((.((((((((((((.((...(((((....))))).......)).)))))))))))).))))))))).))))

Structure

g    C         U            g  ----aua     a 
 aaug AGCCAAGGG GAUUUGCCGGca au       uauga u
 |||| ||||||||| |||||||||||| ||       |||||  
 uuaC UCGGUUCUC UUGAACGGCugu ua       auacu a
-    A         C            g  cguagag     u 

Annotation confidence High

Genome context

chr2: 13450873-13450957 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR169c

Mature mtr-miR169c-5p

• Accession: MIMAT0011063
• Description: Medicago truncatula mtr-miR169c-5p mature miRNA
• Sequence: 6 - CAGCCAAGGGUGAUUUGCCGG - 26
• Evidence: experimental ; 454 [1]

Mature mtr-miR169c-3p

• Accession: MIMAT0054764
• Description: Medicago truncatula mtr-miR169c-3p mature miRNA
• Sequence: 62 - CGGCAAGUUCCUCUUGGCUAC - 82
• Evidence: experimental ; unknown

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796