miRBase entry: cre-MIR918

Stem-loop cre-MIR918


Accession
MI0005697
Description
Chlamydomonas reinhardtii cre-MIR918 precursor miRNA


Sequence

263730 reads, 16906.0 reads per million, 51 experiments
ccaauacgagacgucugcaccgcacaugucucaggaagagaucguccguaguagcaagcugcuggaggguaucucggucagcaucucgauuGGCAAGACGUCCACUCCGGGUAcgcgccgcucaugcgaugacgccuucaucgcgugagcggcgugUACCUGAAGCGGACAUCUUGCCaaacgaaaugcugaccgagauacccugaaguagcuugcuaauaguggcgauguccuccugagacaugugcggcgcagacgucccgcauugg
(((((.((.(((((((((.(((((((((((((((((.((.((((((..((.((((((((((((..(((((((((((((((((((.(((.(((((((((.((((.((.(((((((((((((((((((((((((.....))))))))))))))))))))))))).)).)))).))))))))).))).)))))))))))))))))))..)))))))))))).))..)))))).)).))))))))))))))))).))))))))).)).)))))

Structure
     a  a         a                 a  g      cg  g            gg                   c   a         C    A  C                         c 
ccaau cg gacgucugc ccgcacaugucucagga ga aucguc  ua uagcaagcugcu  aggguaucucggucagcau ucg uuGGCAAGA GUCC CU CGGGUAcgcgccgcucaugcgauga g
||||| || ||||||||| ||||||||||||||||| || ||||||  || ||||||||||||  ||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||||||||||||| c
gguua gc cugcagacg ggcguguacagaguccu cu uagcgg  au aucguucgauga  ucccauagagccagucgua agc aaCCGUUCU CAGG GA GUCCAUgugcggcgagugcgcuacu c
     c  c         c                 c  g      ug  a            ag                   a   a         A    C  A                         u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
ref|NC_057008.1|: 935241-935509 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cre-MIR918
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cre-miR918-5p

Accession MIMAT0060758
Description Chlamydomonas reinhardtii cre-miR918-5p mature miRNA
Sequence 92 - GGCAAGACGUCCACUCCGGGUA - 113
Evidence experimental
unknown

Mature cre-miR918-3p

Accession MIMAT0004385
Description Chlamydomonas reinhardtii cre-miR918-3p mature miRNA
Sequence 157 - UACCUGAAGCGGACAUCUUGCC - 178
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17470535
    A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
    "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
    "Genes Dev (2007) 21:1190-1203