Stem-loop cre-MIR907

Accession

MI0005700

Description

Chlamydomonas reinhardtii cre-MIR907 precursor miRNA

Sequence

214561 reads, 7528.0 reads per million, 51 experiments

ccagcccagcgcUCGCACCGCUCGCAGAAGACAucgcuggcaccguguuggccgccauuugagcgcuuggucacaucgcuggcacccacggcuggcaccguggccgccacuugaccaagcgcuaaauaucggccaacncggugccagcgaugUCUUCUGCGAGCGGUGCGAGCgcugggcugg
(((((((((((((((((((((((((((((((((((((((((((((.((((((((..((((.((((((((((((....(.((((..((((((......))))))..))))).))))))))))))))))..)))))))).)))))))))))))))))))))))))))))))))))))))))))))

Structure

                                             u        cc    g            cauc c    ac      cu 
ccagcccagcgcUCGCACCGCUCGCAGAAGACAucgcuggcaccg guuggccg  auuu agcgcuugguca    g uggc  ccacgg  g
||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||    | ||||  ||||||   
ggucgggucgCGAGCGUGGCGAGCGUCUUCUguagcgaccguggc caaccggc  uaaa ucgcgaaccagu    c accg  ggugcc  g
                                             n        ua    -            ---u -    cc      ac 

Annotation confidence High

Genome context

ref|NC_057009.1|: 4088542-4088724 [+]

Mature cre-miR907-5p

• Accession: MIMAT0060759
• Description: Chlamydomonas reinhardtii cre-miR907-5p mature miRNA
• Sequence: 13 - UCGCACCGCUCGCAGAAGACA - 33
• Evidence: experimental ; unknown

Mature cre-miR907-3p

• Accession: MIMAT0004389
• Description: Chlamydomonas reinhardtii cre-miR907-3p mature miRNA
• Sequence: 153 - UCUUCUGCGAGCGGUGCGAGC - 173
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17470535
   A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
   "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
   "Genes Dev (2007) 21:1190-1203