Stem-loop cre-MIR915

Accession

MI0005708

Description

Chlamydomonas reinhardtii cre-MIR915 precursor miRNA

Literature search

1 open access papers mention cre-MIR915
(1 sentences)

Sequence

82854 reads, 3964.0 reads per million, 51 experiments

caacgcugccgcggaggcgcucggcguggacggggacgagcucggcgaccuucucuuuacgcugucgaaacUAUCGGAGGAGCAGCUCAAAUucuuuccaauagccgcuggcaauaaggcaaucguugcguuuggguccucucgcagacugcgcaacgcaacgauugccuuauugucagcgccuaucggaaagaauUCGAGCUGCCCCUCCGAUAGUuccgacagcguaaaaagaaggucgccgagcucggugcccguccacgccgagcccuccgcggcagcguug
(((((((((((((((((.((((((((((((((((.(((((((((((((((((((.((((((((((((.((((((((((((.(((((((.((((((((((.((((.(((((((((((((((((((((((((((.(.((..(((...)))..)).)))))))))))))))))))))))))))).)))).)))))))))).))))))).)))))))))))).)))))))))))).))))))))))))))))).)).)))))))))))))))))))))))))))))))))

Structure

                 c                g  -                 c            a            A       A          a    c                           u g  cc   c 
caacgcugccgcggagg gcucggcguggacggg ac gagcucggcgaccuucu uuuacgcugucg aacUAUCGGAGG GCAGCUC AAUucuuucc auag cgcuggcaauaaggcaaucguugcguu g gu  ucu  
||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||| | ||  ||| g
guugcgacggcgccucc cgagccgcaccugccc ug cucgagccgcuggaaga aaaugcgacagc uUGAUAGCCUCC CGUCGAG Uuaagaaagg uauc gcgacuguuauuccguuagcaacgcaa c cg  aga  
                 -                g  g                 a            c            C       C          c    c                           - g  uc   c 

Annotation confidence Medium

Genome context

ref|NC_057012.1|: 5020254-5020539 [-]

Mature cre-miR915-5p

• Accession: MIMAT0004398
• Description: Chlamydomonas reinhardtii cre-miR915-5p mature miRNA
• Sequence: 72 - UAUCGGAGGAGCAGCUCAAAU - 92
• Evidence: experimental ; cloned [1]

Mature cre-miR915-3p

• Accession: MIMAT0060764
• Description: Chlamydomonas reinhardtii cre-miR915-3p mature miRNA
• Sequence: 197 - UCGAGCUGCCCCUCCGAUAGU - 217
• Evidence: experimental ; unknown

References

1. PubMed ID: 17470535
   A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
   "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
   "Genes Dev (2007) 21:1190-1203