miRBase entry: cre-MIR917

Stem-loop cre-MIR917


Accession
MI0005710
Description
Chlamydomonas reinhardtii cre-MIR917 precursor miRNA


Sequence

574517 reads, 29034.0 reads per million, 51 experiments
gcagcaacggcucccagagcugaccaaugaggccauugacaaccgccugccgauucucuuugaagaaggcgagcgacuugucgcccgaauacagcgcccgaaauuuugucacgauccagucaccggcgugcgcuucgaugugcuguAACACAGGUCGCGGCGUAGCUacucuuaaggccucaaccaaagggccuuugcggcguuucacgguuauguucgaagucgguacuaacaaucugaaccaaagucggagcccaagucugaaccaaagucguuugguucagacuguuagugccgacuuugguucagacugcuagugccgacuucgaacauaaccgugaaacgccgcaaaggcccuuugguugaggacuuaagaguAGCUACGCCGCGACCUGUGUUacagcacaucgaagcgcacgccggugacuggaucgugacaaaauuucgggcgcuguauucgggcgacaagucgcucgccuucuucaaagagaaucggcaggcgguugucaauggccucauuggucagcugugggagccguugcugc
((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((.((.((((((((((((((((.((...(((((((((((((....)))))))))))))....)).)))))))))))))))).)).)))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))

Structure
                g                                                                                                                                                               g                                                      a  a                a  -cca             g 
gcagcaacggcuccca agcugaccaaugaggccauugacaaccgccugccgauucucuuugaagaaggcgagcgacuugucgcccgaauacagcgcccgaaauuuugucacgauccagucaccggcgugcgcuucgaugugcuguAACACAGGUCGCGGCGUAGCUacucuuaag ccucaaccaaagggccuuugcggcguuucacgguuauguucgaagucgguacua ca ucugaaccaaagucgg gc    agucugaaccaaa u
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||    |||||||||||||  
cgucguugccgagggu ucgacugguuacuccgguaacuguuggcggacggcuaagagaaacuucuuccgcucgcugaacagcgggcuuaugucgcgggcuuuaaaacagugcuaggucaguggccgcacgcgaagcuacacgacaUUGUGUCCAGCGCCGCAUCGAugagaauuc ggaguugguuucccggaaacgccgcaaagugccaauacaagcuucagccgugau gu agacuugguuucagcc ug    ucagacuugguuu c
                g                                                                                                                                                               a                                                      c  c                g  auug             g 


Annotation confidence High
Do you think this miRNA is real?

Genome context
ref|NC_057010.1|: 2881980-2882524 [-]

Database links

Mature cre-miR917-5p

Accession MIMAT0004404
Description Chlamydomonas reinhardtii cre-miR917-5p mature miRNA
Sequence 147 - AACACAGGUCGCGGCGUAGCU - 167
Evidence experimental
cloned [1]

Mature cre-miR917-3p

Accession MIMAT0060765
Description Chlamydomonas reinhardtii cre-miR917-3p mature miRNA
Sequence 379 - AGCUACGCCGCGACCUGUGUU - 399
Evidence experimental
unknown

References

  1. PubMed ID: 17470535
    A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
    "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
    "Genes Dev (2007) 21:1190-1203