Stem-loop dme-mir-958

Accession

MI0005812

Description

Drosophila melanogaster dme-mir-958 precursor miRNA mir-958

Gene
family

RF03962; mir-958

Literature search

2 open access papers mention dme-mir-958
(7 sentences)

Sequence

103527 reads, 2557 reads per million, 48 experiments

ggcgugucuauggcaAGUAGAAUAGCAGGCUUAUCACAuguuuaauucaaucugcugUGAGAUUCUUCUAUUCUACUUUcgacaacacccgu
((.((((...(((.(((((((((((.(((....(((((.((............)))))))....)))))))))))))))))...))))))..

Structure

--  c    cua   c           C   CUUA     u  uuaau 
  gg gugu   ugg aAGUAGAAUAG AGG    UCACA gu     u
  || ||||   ||| ||||||||||| |||    ||||| ||      
  cc caca   gcU UUCAUCUUAUC UUC    AGUgu cg     c
ug  -    aca   -           -   UUAG     -  ucuaa 

Annotation confidence High

Genome context

chr3L: 22669289-22669380 [-]

Mature dme-miR-958-3p

• Accession: MIMAT0005471
• Description: Drosophila melanogaster dme-miR-958-3p mature miRNA
• Sequence: 58 - UGAGAUUCUUCUAUUCUACUUU - 79
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-958-5p

• Accession: MIMAT0020852
• Description: Drosophila melanogaster dme-miR-958-5p mature miRNA
• Sequence: 16 - AGUAGAAUAGCAGGCUUAUCACA - 38
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879