Stem-loop dme-mir-959

Accession

MI0005814

Description

Drosophila melanogaster dme-mir-959 precursor miRNA mir-959

Gene
family

RF03958; mir-959

Literature search

2 open access papers mention dme-mir-959
(13 sentences)

Sequence

3815 reads, 159 reads per million, 42 experiments

uuaacuuuguucuauauucUUAGUACUCGGGUUGAUAAAGaccuuuucuucagggagccuUUGUCAUCGGGGGUAUUAUGAAauauaguuuaaagaaa
....(((((..((((((((.((((((((....((((((((.((((......))))...))))))))....)))))))).).)))))))..)))))...

Structure

uuaa     uu       - U        GGGU        --a    uu 
    cuuug  cuauauu c UAGUACUC    UGAUAAAG   ccuu  c
    |||||  ||||||| | ||||||||    ||||||||   ||||   
    gaaau  gauauaA G AUUAUGGG    ACUGUUuc   ggga  u
-aaa     uu       A U        GGCU        cga    cu 

Annotation confidence High

Genome context

chr2L: 5640940-5641037 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from dme-mir-959

Mature dme-miR-959-3p

• Accession: MIMAT0005473
• Description: Drosophila melanogaster dme-miR-959-3p mature miRNA
• Sequence: 61 - UUGUCAUCGGGGGUAUUAUGAA - 82
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-959-5p

• Accession: MIMAT0020854
• Description: Drosophila melanogaster dme-miR-959-5p mature miRNA
• Sequence: 20 - UUAGUACUCGGGUUGAUAAAG - 40
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879