miRBase entry: dme-mir-959

Stem-loop dme-mir-959


Accession
MI0005814
Description
Drosophila melanogaster dme-mir-959 precursor miRNA mir-959
Gene
family?
RF03958; mir-959

Literature search
2 open access papers mention dme-mir-959
(13 sentences)

Sequence

3815 reads, 352 reads per million, 42 experiments
uuaacuuuguucuauauucUUAGUACUCGGGUUGAUAAAGaccuuuucuucagggagccuUUGUCAUCGGGGGUAUUAUGAAauauaguuuaaagaaa
....(((((..((((((((.((((((((....((((((((.((((......))))...))))))))....)))))))).).)))))))..)))))...

Structure
uuaa     uu       - U        GGGU        --a    uu 
    cuuug  cuauauu c UAGUACUC    UGAUAAAG   ccuu  c
    |||||  ||||||| | ||||||||    ||||||||   ||||   
    gaaau  gauauaA G AUUAUGGG    ACUGUUuc   ggga  u
-aaa     uu       A U        GGCU        cga    cu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr2L: 5640940-5641037 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from dme-mir-959
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-959-3p

Accession MIMAT0005473
Description Drosophila melanogaster dme-miR-959-3p mature miRNA
Sequence 61 - UUGUCAUCGGGGGUAUUAUGAA - 82
Evidence experimental
454 [1-2], Illumina [2]
Database links
Predicted targets

Mature dme-miR-959-5p

Accession MIMAT0020854
Description Drosophila melanogaster dme-miR-959-5p mature miRNA
Sequence 20 - UUAGUACUCGGGUUGAUAAAG - 40
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879