miRBase entry: dme-mir-965

Stem-loop dme-mir-965


Accession
MI0005821
Description
Drosophila melanogaster dme-mir-965 precursor miRNA mir-965
Gene
family?
RF02520; mir-965

Literature search
3 open access papers mention dme-mir-965
(4 sentences)

Sequence

32497 reads, 3072 reads per million, 49 experiments
gacaauauugcucaacauuuuggGGGGUAAAACUGUACGUUAUAUGugcccuucugugauauucaUAAGCGUAUAGCUUUUCCCCUUaaaaguuagagcuauugcaa
(.(((((..(((((((.((((((((((.(((((((((((((.((((.................))))))))))))).))))))))))))))))).))))))))))..

Structure
-- a     uu    -   a          U    -         A    ugcccuu 
  g caaua  gcuc aac uuuuggGGGG AAAA CUGUACGUU UAUG       c
  | |||||  |||| ||| |||||||||| |||| ||||||||| ||||       u
  c guuau  cgag uug aaaaUUCCCC UUUU GAUAUGCGA AUac       g
aa -     --    a   -          -    C         -    uuauagu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr2L: 243035-243141 [-]

Database links

Mature dme-miR-965-3p

Accession MIMAT0005480
Description Drosophila melanogaster dme-miR-965-3p mature miRNA
Sequence 66 - UAAGCGUAUAGCUUUUCCCCUU - 87
Evidence experimental
454 [1-2], Illumina [2]
Database links
Predicted targets

Mature dme-miR-965-5p

Accession MIMAT0020861
Description Drosophila melanogaster dme-miR-965-5p mature miRNA
Sequence 24 - GGGGUAAAACUGUACGUUAUAUG - 46
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879