Stem-loop dme-mir-970

Accession

MI0005827

Description

Drosophila melanogaster dme-mir-970 precursor miRNA mir-970

Gene
family

RF03508; mir-970

Literature search

6 open access papers mention dme-mir-970
(14 sentences)

Sequence

86296 reads, 1071 reads per million, 49 experiments

gaaaggcaucuguugcAGCUAGCGGGUGUUUUAUUUGGUAgcuguaaugauuugaaucuaUCAUAAGACACACGCGGCUAUaaccguugucuaag
...(((((.(.((((.((((.(((.((((((((..((((((...(((....)))...)))))))))))))).))))))).)))).).)))))...

Structure

gaa     u u    c    A   G        UU      cug   u 
   aggca c guug AGCU GCG GUGUUUUA  UGGUAg   uaa g
   ||||| | |||| |||| ||| ||||||||  ||||||   |||  
   ucugu g caaU UCGG CGC CACAGAAU  ACUauc   guu a
gaa     u c    A    -   A        --      uaa   u 

Annotation confidence Medium

Genome context

chrX: 12636336-12636430 [+]

Mature dme-miR-970-3p

• Accession: MIMAT0005486
• Description: Drosophila melanogaster dme-miR-970-3p mature miRNA
• Sequence: 61 - UCAUAAGACACACGCGGCUAU - 81
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-970-5p

• Accession: MIMAT0020867
• Description: Drosophila melanogaster dme-miR-970-5p mature miRNA
• Sequence: 17 - AGCUAGCGGGUGUUUUAUUUGGUA - 40
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879