Stem-loop dme-mir-971

Accession

MI0005828

Description

Drosophila melanogaster dme-mir-971 precursor miRNA mir-971

Gene
family

RF03653; mir-971

Literature search

3 open access papers mention dme-mir-971
(5 sentences)

Sequence

921 reads, 51 reads per million, 43 experiments

uccguggcuggcaucgcucGCUGUAAAUUGUAAUCAUCAAAGCguuuucucagagccgcUUGGUGUUACUUCUUACAGUGAgugugccaguccgua
..((.((((((((.((((((((((((...((((.((((((.(((((((...)))).)))))))))))))...))))))))))))))))))))))..

Structure

uc  u        u            AUU    U      A   -    c 
  cg ggcuggca cgcucGCUGUAA   GUAA CAUCAA GCg uuuu  
  || |||||||| ||||||||||||   |||| |||||| ||| |||| u
  gc cugaccgu gugAGUGACAUU   CAUU GUGGUU cgc gaga  
au  -        -            CUU    -      -   c    c 

Annotation confidence High

Genome context

chrX: 13062072-13062167 [+]

Mature dme-miR-971-3p

• Accession: MIMAT0005487
• Description: Drosophila melanogaster dme-miR-971-3p mature miRNA
• Sequence: 60 - UUGGUGUUACUUCUUACAGUGA - 81
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-971-5p

• Accession: MIMAT0020868
• Description: Drosophila melanogaster dme-miR-971-5p mature miRNA
• Sequence: 20 - GCUGUAAAUUGUAAUCAUCAAAGC - 43
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879